MmuEX6069859 @ mm9
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119872299-119874965:+
Coord C1 exon
chr9:119872299-119872409
Coord A exon
chr9:119873350-119873431
Coord C2 exon
chr9:119874815-119874965
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCTTGTGTGTCTTCTGATAGATG
3' ss Score
8.34
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGGTGCTGGAGCTGGCCCATCTCTACCTGCTTCTGGGTCAGCTGGACCTGTGTGAACAGCGCTGTGCCCCCCTCTTAGAGATGGAGCAGACCCACGAGAGAGCCGCTGTG
Seq A exon
ATGCTGGCCGACCTGATGTTTAGAAGACAAAACTATGAAACTGCCATCAATCTCTACCACCAAGTGCTGGAGAAAGCTCCAG
Seq C2 exon
ACAATTTTTTGGTATTGAATAAACTGGTCGATCTGCTACGACGGAGCGGCAAGCTTGAAGAGGCCCCTGCTTTCTTTGAACTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAGCCAGGGTTTAACTACTGCCAAGGCATTTACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
PF145591=TPR_19=PD(5.9=14.3),PF145591=TPR_19=PU(39.3=78.6)
C2:
PF145591=TPR_19=PD(58.9=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCATCTCTACCTGCTTCT
R:
GTTCAAAGAAAGCAGGGGCCT
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: