HsaEX0067823 @ hg38
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39118069-39125160:+
Coord C1 exon
chr3:39118069-39118177
Coord A exon
chr3:39120997-39121189
Coord C2 exon
chr3:39125063-39125160
Length
193 bp
Sequences
Splice sites
3' ss Seq
CACCTTCCTGTTTCTTGCAGTGT
3' ss Score
9.96
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
AATCCTAGAAAAAGATGAGAGCAATATTGATGCCTGCCAAATTCTAACCGTGCATGAGCTTGCAAGAGAAGGAAACATGACCACAGTAAGTTCTTTGAAGACTCAGAAG
Seq A exon
TGTGGGAGTCACCAGGTGATTCTAGGGCTAGTGTGTAGTTTCATCGAGCGCACCTTCATGGCCACCCCCTCGTATGTCCATGTGGCCACAGAACTGGGCTATCTCTTCATCCTGAAGAACCAAGTGAAAGAGGCCTTGCTGTGGTATTCAGAAGCCATGAAACTGGACAAGGATGGCATGGCTGGTTTGACAG
Seq C2 exon
GGATCATCTTGTGTCATATCTTAGAAGGCCACCTGGAGGAAGCTGAGTACCGGCTGGAATTCCTGAAGGAGGTGCAGAAGTCCCTTGGGAAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(58.0=61.5)
C2:
PF134141=TPR_11=PD(40.6=84.8)
Main Skipping Isoform:
ENST00000431162fB28991
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGAGCAATATTGATGCCTGC
R:
CTCAGACTTCCCAAGGGACT
Band lengths:
194-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development