BtaEX6093525 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12496783-12501627:+
Coord C1 exon
chr22:12496783-12496881
Coord A exon
chr22:12497988-12498180
Coord C2 exon
chr22:12501530-12501627
Length
193 bp
Sequences
Splice sites
3' ss Seq
CCCGTGTCTGTTCCTTTCAGTGT
3' ss Score
10.86
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GCTGCCGAGCACGTTAGGAATCTGATTAAGGCACTGGAAACAAGAGAGCCCGAAAATCCAAGCCTCCATCTTAAAAAAATTCTTGTGGTGAGCAGACTG
Seq A exon
TGTGGGAGGCACCAGGGGATTCTGCAGCTGGTGTGTAGCTTCATCGAACGAACCTTCATGGCCACATCCTCCGACGCCCACATGGCCACTGAGCTGGGCTACCTCTTCATCCTGCAGGACCAAGTAAAGGAGGCGTCTCTTTGGTACTCGAAGGCCATGAAGCTGGACGAGAGCAGCGTGGCTGCCTTGACAG
Seq C2 exon
GGATCATCTGGTGCCAGATCTTAGACGGCCACCTGGAGGAGGCCGAACACCAGCTGGAATTCCTGAAGGAGGTGCAGCAGTCTCTGGGGAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477-'8-10,'8-7,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(63.1=63.1)
C2:
PF134141=TPR_11=PD(35.4=69.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGAGCACGTTAGGAATC
R:
TTGGACTTCCCCAGAGACTGC
Band lengths:
195-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]