RnoEX0094643 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128633831-128639154:+
Coord C1 exon
chr8:128633831-128633929
Coord A exon
chr8:128634658-128634850
Coord C2 exon
chr8:128639057-128639154
Length
193 bp
Sequences
Splice sites
3' ss Seq
CATATGTCCACTCTTGGCAGTGT
3' ss Score
5.75
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
GCTGCCGACCGTGTCAGAAACCTAATCAAGGCGCTAGAGACTGGAGAGCCCCAAAATCCAAACCTACATCTTAAGAAGATCCTTGCAGTCAGCAGGCTG
Seq A exon
TGTGGGAGGCACCAGGTGGTCCATCGGCTTGTGAGCGGCTTCCTGGAGCGCACCTTCATGGCCACACCTTCCTGTGCCCTTGTGGCCACAGAGCTGGGCTACCTCTTCATCCTACAGCAACAAGTGAAGGAAGCCTCTCTGTGGTACAAGGAGGCCATGAAGCTGGAGGAGAACAGGCTGGCTGCCTTGGCAG
Seq C2 exon
GGAGCATCTGGTGCCAGATCCTACAGGGCCAGCTGGAGGAGGCTGCTCACCAGCTGGAGTTCCTCAAGGAGGTGCAGCTGTCACTTGGGAAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACCGTGTCAGAAACCTA
R:
CTCAGACTTCCCAAGTGACAGC
Band lengths:
194-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]