HsaEX0072717 @ hg19

Exon Skipping

Gene

ENSG00000067646 | ZFY

Description

zinc finger protein, Y-linked [Source:HGNC Symbol;Acc:12870]

Coordinates

chrY:2843552-2846121:+

Coord C1 exon

chrY:2843552-2843695

Coord A exon

chrY:2844711-2844863

Coord C2 exon

chrY:2845981-2846121

Length

153 bp

Sequences

Splice sites

3' ss Seq

TTTATTTATTTTGTGCTTAGATG

3' ss Score

7.5

5' ss Seq

ATGGTAACT

5' ss Score

6.06

Exon sequences

Seq C1 exon

GTGGAACTGTAGACATTGTGGAGAGTGAACCTGAAAATGATCATGGAGTTGAACTACTTGATCAGAACAGCAGTATTCGTGTTCCCAGGGAAAAGATGGTTTATATGACTGTCAATGACTCTCAACAAGAAGATGAAGATTTAA

Seq A exon

ATGTTGCTGAAATTGCTGATGAAGTTTATATGGAAGTGATCGTAGGAGAGGAGGATGCTGCTGTTGCAGCAGCAGCAGCTGCTGTGCATGAGCAGCAAATTGATGAGGATGAAATGAAAACCTTCGTACCAATTGCATGGGCAGCAGCTTATG

Seq C2 exon

GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTTGGCAGACTGGCTAAACAGAAACCAAAGAAAAAGAGAAGACCTGATTCCAGGCAGTACCAAACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000067646_MULTIEX2-2/2=1-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.841 A=0.115 C2=0.696

Domain overlap (PFAM):

C1:

PF047048=Zfx_Zfy_act=FE(19.8=100),PF047048=Zfx_Zfy_act=PU(2.1=2.0)

A:

PF047048=Zfx_Zfy_act=FE(15.1=100)

C2:

PF047048=Zfx_Zfy_act=PD(0.4=2.1),PF047048=Zfx_Zfy_act=PD(95.7=93.8)

Main Inclusion Isoform:

ENSP00000155093

Main Skipping Isoform:

ENSP00000393908

Other Inclusion Isoforms:

ENSP00000372525, ENSP00000402502

Other Skipping Isoforms:

NA

Associated events

HsaINT0185648

Other assemblies

hg38

Conservation

Mouse

(mm10)

chrX:94081337-94081486

Mouse

(mm9)

chrX:91326676-91326825

Rat

(rn6)

No conservation detected

Cow

(bosTau6)

chrX:126151664-126151816

Chicken

(galGal4)

chr1:117634706-117634840

HIGH PSI

GgaEX1003531

([1])

Chicken

(galGal3)

chr1:121646946-121647080

HIGH PSI

GgaEX1003531

([2])

Zebrafish

(danRer10)

chr24:16872145-16872279

HIGH PSI

DreEX0086448

(zfx)

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

GTGGAACTGTAGACATTGTGGAGA

R:

TTTCTGTTTAGCCAGTCTGCCA

Band lengths:

242-395

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

Genotype-Tissue Expression Project (GTEx)
Autistic and control brains
Pre-implantation embryo development

Other AS DBs:

FasterDB (Includes CLIP-seq data)

AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)

APPRIS (Selection of principal isoform)

DEU primates (Only for human)

Special

HsaEX0072717 @ hg19

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS