HsaEX0072717 @ hg38
Exon Skipping
Gene
ENSG00000067646 | ZFY
Description
zinc finger protein, Y-linked [Source:HGNC Symbol;Acc:HGNC:12870]
Coordinates
chrY:2975511-2978080:+
Coord C1 exon
chrY:2975511-2975654
Coord A exon
chrY:2976670-2976822
Coord C2 exon
chrY:2977940-2978080
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTATTTATTTTGTGCTTAGATG
3' ss Score
7.5
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTGGAACTGTAGACATTGTGGAGAGTGAACCTGAAAATGATCATGGAGTTGAACTACTTGATCAGAACAGCAGTATTCGTGTTCCCAGGGAAAAGATGGTTTATATGACTGTCAATGACTCTCAACAAGAAGATGAAGATTTAA
Seq A exon
ATGTTGCTGAAATTGCTGATGAAGTTTATATGGAAGTGATCGTAGGAGAGGAGGATGCTGCTGTTGCAGCAGCAGCAGCTGCTGTGCATGAGCAGCAAATTGATGAGGATGAAATGAAAACCTTCGTACCAATTGCATGGGCAGCAGCTTATG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTTGGCAGACTGGCTAAACAGAAACCAAAGAAAAAGAGAAGACCTGATTCCAGGCAGTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067646-'18-13,'18-11,19-13=AN
Average complexity
A_S
Mappability confidence:
57%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.832 A=0.115 C2=0.677
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(19.8=100),PF047048=Zfx_Zfy_act=PU(2.1=2.0)
A:
PF047048=Zfx_Zfy_act=FE(15.1=100)
C2:
PF047048=Zfx_Zfy_act=PD(0.4=2.1),PF047048=Zfx_Zfy_act=PD(95.7=93.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACTGTAGACATTGTGGAGA
R:
TTTCTGTTTAGCCAGTCTGCCA
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development