HsaINT0185648 @ hg19
Intron Retention
Gene
ENSG00000067646 | ZFY
Description
zinc finger protein, Y-linked [Source:HGNC Symbol;Acc:12870]
Coordinates
chrY:2844711-2846121:+
Coord C1 exon
chrY:2844711-2844863
Coord A exon
chrY:2844864-2845980
Coord C2 exon
chrY:2845981-2846121
Length
1117 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACT
5' ss Score
6.06
3' ss Seq
GTTTTAATGCACATTGTTAGGTA
3' ss Score
3.88
Exon sequences
Seq C1 exon
ATGTTGCTGAAATTGCTGATGAAGTTTATATGGAAGTGATCGTAGGAGAGGAGGATGCTGCTGTTGCAGCAGCAGCAGCTGCTGTGCATGAGCAGCAAATTGATGAGGATGAAATGAAAACCTTCGTACCAATTGCATGGGCAGCAGCTTATG
Seq A exon
GTAACTTACATAGAAGCCAGAAGGATTGAGTAGTTTTTGAACATTAATTCACTGTTGAAAGTGGTTTCTGTTGGCCAGGCGTGGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAAATATTTTTAAAAAATTAGCCAGACGTGGTGGCAGGCACCTGTAATCCCAGCTACTGAGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCAGCAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGTTTTTTTTAGGGTTTCATGATTTAAGCAAAAGTAGAGGAGGATTAAATAGTCTCCCTGTTGCCTTTAATTTTAACATGAACTTCTTTTATTATGTAAGAAGTGTGGGAGCTTTCAGTCTAACATTTTAAATCTTGGTTTATAGGTGACACATAACTTTACAATTTTTGGGAGATAGCAGGGAGTCCAGTAGAGCAGCATGCTGCTAGATACGGAAGCTAGGCACTTCCCCTGGTCTTGCCATATATATGCCCATAAAACACATGGTCTACAATTGGGGGCCAGGTGTGGCTCTTGCCTGTAATCCCAGCACTTTGGGAGTCTGAGGCAGGTGGATGACCTGAGGTCAGGAGTTCAAGATCAGCCTGGCCAATATGGTGAAACCTCCTCTCTACTAAAAATACAAAAAAATGAGATGGGTGTGATGGCGTTGTTCCTGTAATCCCAGCTATTCAGGATGCTGAGGCAGGATAATCACTTGAACCTGAGAGGAGGAGGTTGCAGTGAGCCAAGATTACACCTCTGTACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAAAAATAAATAAAGTAAGGACTTTCTGTCATTCATGAGTGTCAGGACTTCTTGTTGTTAATAAAGAATTCGTAATTCTTTAGAATTTATAATGTTGTGTAATTCTGTGTTTTAATGCACATTGTTAG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTTGGCAGACTGGCTAAACAGAAACCAAAGAAAAAGAGAAGACCTGATTCCAGGCAGTACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067646-ZFY:NM_001145276:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.696
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.1=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(0.4=2.1),PF047048=Zfx_Zfy_act=PD(95.7=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCTGAAATTGCTGATGAAGT
R:
CTGTTTGGTACTGCCTGGAATCA
Band lengths:
294-1411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)