DreINT0177967 @ danRer10
Intron Retention
Gene
ENSDARG00000074453 | zfx
Description
zinc finger protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-061220-2]
Coordinates
chr24:16872145-16872659:+
Coord C1 exon
chr24:16872145-16872279
Coord A exon
chr24:16872280-16872509
Coord C2 exon
chr24:16872510-16872659
Length
230 bp
Sequences
Splice sites
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
3' ss Seq
ATTAATATAATGTCTGTCAGGTG
3' ss Score
5.93
Exon sequences
Seq C1 exon
ATGTGGCTAAAATCACAGATGAGGTCTACATGGAAGTGGTGGTTGGGGGTGAAGACCCTGGAAATGTTCAGAGGACACTTGAAAACGCATCACTTAGCAAAGACTTCATGCCTGTGGCTTGGGCAGCTGCTTACG
Seq A exon
GTCAGTAAAGTCACCATTGTTTATGGTTAACGCATATATTTTTTACAGTTAATTTTAAAGAAAATCTGCATTTGTATGTCTCCTTTTATCATTTATATTTTCCCTGGTATAGAATGAACGTATTTGCTTATTACAGTTATTTGGATAAATTTGGGAAAATGTGTTTAGATGGAGTTTGTAAATGTGTTTGTTTACAATGTGAGAAAGGTAATTAATATAATGTCTGTCAG
Seq C2 exon
GTGGGGAAGAGAGCGAAAGCTGTGAGAACCGGAATGGAGCAGCTAGTGCTCTGCTGCATGTTGATGAATCTGACATGATTGAAAGGCTCAGTCGGCAACGAAACAAGAACAGGGGCAAAAAACGCTCTGAATTTCGGCACATTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074453:ENSDART00000149149:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.2=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(15.2=94.1),PF049598=ARS2=PU(15.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCTAAAATCACAGATGAGGT
R:
CTGTCTGAATGTGCCGAAATTCA
Band lengths:
284-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]