HsaEX0073902 @ hg19
Exon Skipping
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48024736-48032295:-
Coord C1 exon
chr19:48032207-48032295
Coord A exon
chr19:48025111-48025251
Coord C2 exon
chr19:48024736-48024911
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTTTTCTTTCACTAGATC
3' ss Score
9.43
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTTCAGACGTCTGGACCCCTATAGAGAAGAGGCTTTTTAAGAAGGCGTTCTATGCCCACAAGAAGGACTTCTACTTGATACACAAGATG
Seq A exon
ATCCAGACAAAGACGGTAGCTCAGTGCGTTGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCTAGAAAAGAGGGTCAAGAGAGAGCCGGAGGAAGTGGAAAGGACAGAGGAAAAG
Seq C2 exon
GTCCCATGCAGCCCTCGGGAGAGACCCAGCCACCATCCAACTCCCAAGTTAAAGACCAAGAGTTATAGGAGGGAGTCCATCCTCAGCTCCAGCCCAAATGCAGGCTCCAAGCGGACCCCCGAGCTGTTGGGAAGTGCAGAGAGCCAGGGCATTTTTCCATGCAGAGAGTGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156_MULTIEX1-8/8=7-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.349 C2=0.713
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGACGTCTGGACCCCTA
R:
TGGAAAAATGCCCTGGCTCTC
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)