BtaEX0041376 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54935427-54937548:-
Coord C1 exon
chr18:54937460-54937548
Coord A exon
chr18:54935813-54935953
Coord C2 exon
chr18:54935427-54935608
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTTCCCCCATCAGATC
3' ss Score
10.31
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTTAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTAACTTGATACACAAGACG
Seq A exon
ATCCAGACAAAGACCGTAGCCCAGTGTGTCGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCCAGAAAAGAGGGTCAGGAGGGAGCCAGATGAAGTAGACAGGGCGGAAGCCAAG
Seq C2 exon
GTCACTTGCAGTCCTCGGGAGAGACCCAGCCACCGTCCAACCCCCGAACTAAAGATAAAGACCAAGAGTTACAGGAGGGAGTCCATCCTCAACTCCAGCCCGAGCACTGGCCCCAAGCGGAGCCCCGAGGCACCCGGGAGTGTGGAGGGCCAGGGCGCCTTTCCCTGCCGGGAGTGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.447 C2=0.820
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATGGAGAAGAGGCTCTT
R:
TCTCACACTCCCGGCAGG
Band lengths:
254-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development