DreEX6045148 @ danRer10
Exon Skipping
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25988943-25991234:-
Coord C1 exon
chr20:25991146-25991234
Coord A exon
chr20:25990907-25991029
Coord C2 exon
chr20:25988943-25989056
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTGTTTTTGCCAGGTG
3' ss Score
10.66
5' ss Seq
GTGGTAAAA
5' ss Score
2.98
Exon sequences
Seq C1 exon
GATCAGACTATTGGAGTGCAGATGAAAAACGATACTTCAACAAGGGAATTTCTGCTTATACAAAAGATTTCTTCATGGTGCAAAAACTG
Seq A exon
GTGAGGACTAAAACTGTGGCACAGTGTGTGGAGTTCTACTACACCTATAAGAAACAAGCGAGGGTTACTCGTAATGGGACATGTACATATGGACCTTCAGATCCAGAAGAAAGCATCCCTGTG
Seq C2 exon
ATGAACGCAAGACAAGCAGATAAAGAAAATGACTGTAAACAACAGGAGGAAATGGAAGACAGTGTGGATGAAAGGCTACAAGATGTGACCAAGACACTTCAGCAAAGTGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.378 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=39.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGACTATTGGAGTGCAGA
R:
TTGCTGAAGTGTCTTGGTCACA
Band lengths:
194-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]