GgaEX1022248 @ galGal3
Exon Skipping
Gene
ENSGALG00000009282 | C14orf43
Description
NA
Coordinates
chr5:28316418-28318172:+
Coord C1 exon
chr5:28316418-28316506
Coord A exon
chr5:28317666-28317815
Coord C2 exon
chr5:28317999-28318172
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTTCCAAACACCAGATA
3' ss Score
4.31
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATCAGACAGTTGGAAAGTTGCTGAAAAGAAGCTTTTCAACAAAGGCATTGCAATCTACAAGAAGGACTTTTTCTTGGTCCAAAAGCTG
Seq A exon
ATAAAAACCAAGACAGTGGCTCAGTGTGTGGAATTCTACTACACATATAAGAAACAAGTGAAAATTGGTCGGAATGGGACCTTAATTTTTGGAGACATAGATGTTGCTAATGAAAAGTCTGTGAGAGATGAAGCTGAAGTTGACATCAAG
Seq C2 exon
AGTTCCCATAGGTTTGCACGTGTGCTTCCTCTCAGAAGGGACTTTTTCAGTGAAGAACAGGGGCACTTGGAAGAGGAAGAAGAGGAGGCAGAAGAGGCAGAGGAAGGGTTGGATAACAGAAAGAAGAGCACACTCCTTTTCAAAGATGAACAGACACTACAAGATGATTTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.267
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACAGTTGGAAAGTTGCTGA
R:
TGTCTGTTCATCTTTGAAAAGGAGTG
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]