GgaEX1022248 @ galGal4
Exon Skipping
Gene
ENSGALG00000009282 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr5:25430769-25432523:+
Coord C1 exon
chr5:25430769-25430857
Coord A exon
chr5:25432017-25432166
Coord C2 exon
chr5:25432350-25432523
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTTCCAAACACCAGATA
3' ss Score
4.31
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATCAGACAGTTGGAAAGTTGCTGAAAAGAAGCTTTTCAACAAAGGCATTGCAATCTACAAGAAGGACTTTTTCTTGGTCCAAAAGCTG
Seq A exon
ATAAAAACCAAGACAGTGGCTCAGTGTGTGGAATTCTACTACACATATAAGAAACAAGTGAAAATTGGTCGGAATGGGACCTTAATTTTTGGAGACATAGATGTTGCTAATGAAAAGTCTGTGAGAGATGAAGCTGAAGTTGACATCAAG
Seq C2 exon
AGTTCCCATAGGTTTGCACGTGTGCTTCCTCTCAGAAGGGACTTTTTCAGTGAAGAACAGGGGCACTTGGAAGAGGAAGAAGAGGAGGCAGAAGAGGCAGAGGAAGGGTTGGATAACAGAAAGAAGAGCACACTCCTTTTCAAAGATGAACAGACACTACAAGATGATTTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.276
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACAGTTGGAAAGTTGCTGA
R:
TGTCTGTTCATCTTTGAAAAGGAGTG
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]