DreEX6055560 @ danRer10
Exon Skipping
Gene
ENSDARG00000053864 | elmsan1b
Description
ELM2 and Myb/SANT-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-131121-13]
Coordinates
chr17:37395892-37403165:+
Coord C1 exon
chr17:37395892-37395980
Coord A exon
chr17:37402706-37402852
Coord C2 exon
chr17:37403043-37403165
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTATTTGTCTTGAAGGTG
3' ss Score
8.92
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCTCTGACAGCTGGACGCCAGAAGAGCGACGGCTCTTTAACAAAGGCATCGCTACTTACAAGAAGGACTTCTTCATGGTCCAGAAACTG
Seq A exon
GTGAGCTCCAAGACTGTAGCACAGTGTGTGGAGTTTTACTACACATATAAGAAGCAGGTGAAGATCGGCAGGAACGGCACGCTCGTATACGGAGAAACAGAGCCGCTGGAGACTAAACCCACAACAGAGGAGGAAGTGGACAACAAA
Seq C2 exon
AGTTCACAGAAACTCGAATCACGGAAAGAAGATGAGGAGAGCAGGAAGTGGGAAGGGTCATGTGACAGGAAGCAAGAAGACAGCCCCGGCAGGGTGACACAATCTCTACAGGCCACCGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053864-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.469 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=32.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGACAGCTGGACGC
R:
TTTCGGTGGCCTGTAGAGATTG
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]