RnoEX6029320 @ rn6
Exon Skipping
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107639050-107642175:-
Coord C1 exon
chr6:107642087-107642175
Coord A exon
chr6:107640375-107640524
Coord C2 exon
chr6:107639050-107639262
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTGGCTTTAATTCAGATC
3' ss Score
7.94
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTCTGACGAGTGGAAGATGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTATAAGAAAGATTTCTTCCTGGTGCAGAAACTG
Seq A exon
ATCCAGACCAAGACTGTGGCTCAGTGCGTGGAGTTCTACTACACCTACAAGAAACAGGTGAAAATTGGCCGCAACGGGACACTCACCTTTGGTGACCTGGATACCGGTGCTGAGAAGTCCGGCCAAGAGGAAGTCGAGGTGGACGTTAAG
Seq C2 exon
ACTTCTCAGAAGTTCCCAAGGGTGCTTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAACCCAAGAGGGAAATGAAAGAACCCAAGAAGGAGGGGGAGGAGGAGGTACCAGACACCCAGGAAAAGGGAGAGCAGGAGGAGGGGCGAGAGCGCAGCCGTCGGGCCGCGGCTGTCAAAGCTACACAGACACTACAGCCCACTGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACGAGTGGAAGATGGCT
R:
CTCTCGCCCCTCCTCCTG
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]