DmeEX6019306 @ dm6
Exon Skipping
Gene
FBgn0037698 | CG16779
Description
This gene is referred to in FlyBase by the symbol DmelCG16779 (FBgn0037698). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (4 unique). Gene sequence location is 3R:9461084..9493677. Its molecular function is described by: transcription regulatory region sequence-specific DNA binding; transcription factor binding; DNA-binding transcription factor activity. The biological processes in which it is involved are not known. 10 alleles are reported. The phenotype of these alleles manifest in: wing. The phenotypic classes of alleles include: visible; viable; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.
Coordinates
chr3R:9467980-9471901:-
Coord C1 exon
chr3R:9468851-9471901
Coord A exon
chr3R:9468629-9468787
Coord C2 exon
chr3R:9467980-9468404
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTACCCTTTACCCTTGCAGCTG
3' ss Score
11.3
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
CAGCACCCATCCTGAATCCGGATCGCAAGGGCACTGGGCTGTACTGCAATGTGCGCAAGCAATTGGGTCAGGGTCTCTTCGACGCCTTCGACGATGACTTTGGGGACTCGGTGGGCTTGGTAGACTTCTCGGACGAGTCCAAGGTTAACTTGGGATCCACCTACCAGGCGCAGATACCCAGCTGTCGACCGCTGGAGGAGGCATTGCGGGACTCTCCCGGCGCCGAGATGATGTGGAATCCCGAGGTGCAGGAGGACGAAAAGATCCTGATGCGCTACATTGATCTCAGCAAGTCGTCGGCCGTGCCCATGGGCAGTCATTCCGAGGAGGTGGCGCTCCAAACGCTGCTTCGGGCCAAAGGAAACTCGGCGGCGGCTGTGCTCAGCCTACTACAAACGCAGTCCGGCGCCTTCCAGATGAAGTGGACCGCCTACGAGCTGGAGCAGTTCTTGCGCGGATTGGAAAAGAATGGCAAGGACTTTGGCAAGATCGCCAGTGAG
Seq A exon
CTGCAAACGAAGTCCTCCGGCGAATGTGTGCAAATGTACTACTTCTGGAAGAAGCTGTGCGTGGACTACAAGGTGACGCACTTGAAGATGGAGCCCGTGGTGGTCATTGCTCCCGCGGTGGAGAAGCCCTATGTCTGCGAGATTGCCGACTGTTCAGCG
Seq C2 exon
AGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTATGGTCGCAGTGCCAGCAGCAACACCACCAACAACAACAGCAGCAGCAGCAACACTGGCAGCAGCAGCAACGTGCAGCATGCCGCAGCAAGCAGTGCCAGTTCCGGTGGCAACAACAACAACAGCAGCAGCTACGCATGCGCAACACTAAGTGGCAGCAACGGCAGCAGCAATAATGCGAGTACCAATGTCGCTGGAGCAGTAGCAACACACAGCAGCAACATGGCTCAAAACGGCAGCAACTGCAGTGGCCATGCGAATGCAGCAATAGCAACATCTGCGCTTTCGACCACGCCCAAATTGGAGGCGGGCATGGGCAATACCACTAACATACCGATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0037698-'17-13,'17-12,18-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=0.000 C2=0.585
Domain overlap (PFAM):
C1:
PF0144819=ELM2=WD(100=5.2),PF0024926=Myb_DNA-binding=PU(60.9=2.8)
A:
PF0024926=Myb_DNA-binding=PD(34.8=30.2)
C2:
NO
Main Inclusion Isoform:
FBpp0081603
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0303767, FBpp0303768, FBpp0303769, FBpp0311930
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGAGCTGGAGCAGTTCT
R:
TGCTGCTGTTGTTGTTGTTGC
Band lengths:
249-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)