DreEX6004599 @ danRer10
Exon Skipping
Gene
ENSDARG00000098410 | si:dkey-19b23.10
Description
si:dkey-19b23.10 [Source:ZFIN;Acc:ZDB-GENE-141219-47]
Coordinates
chr7:20321322-20324376:+
Coord C1 exon
chr7:20321322-20321410
Coord A exon
chr7:20321491-20321625
Coord C2 exon
chr7:20324276-20324376
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGGCATCTTTATACTTTCAGGTA
3' ss Score
8.86
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCAAGGATATCTGGACTCCAAATGAACAGAAAATGTTCCATAAAGCATTCGCAATTTATGGCAAAGACTTCTCCTTTATACACAAAATG
Seq A exon
GTAAGAACAAAGTCAGTATCACAGTGTATTGAATTCTACTACAACTCCAAGAGACTTTCAGAGAAACAAAGGAAGCAGAGGGAGAGAGAAAAGGAAAGTTTGGAGGCAGAAAGACTTGCAGCTGTCATCAGTCAG
Seq C2 exon
GTTGCTCCTGCCCCAAAGATGATTGTGAATCAAGCCAATCTTGACAGACTGATTAATACTGCACCACTTCCCACAAGCTTTCCCTGTAAACAGTGTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098410-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=35.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGATATCTGGACTCCAA
R:
TTACAGGGAAAGCTTGTGGGA
Band lengths:
178-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]