BtaEX6097551 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15957390-15966825:-
Coord C1 exon
chr23:15966737-15966825
Coord A exon
chr23:15964741-15964854
Coord C2 exon
chr23:15957390-15957590
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGAGATGGTTTTCCCAACAGGTG
3' ss Score
9.89
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTTCGGACAAGTGGACCTCCCTAGAAAGAAAACTGTTTAATAAAGCACTAGCCACTTACAGCAAAGACTTTATTTTTGTACAGAAGATG
Seq A exon
GTGAAGTCCAAGACGGTGGCTCAGTGTGTGGAGTACTATTACACGTGGAAAAAAATCATGAGGTTGGGGAGGAAACACCGGACACGGCTCTCAGAAATCATCGATGACTGTGTG
Seq C2 exon
ACGAGTGAAGAAGATGAAGAGGTAGAGGAGGAGGAGGATCCGGAAGAAGACAGGAAATCCACAAGAGAAGAGGAGAGTGAATTGCCCAAGTCCCCGGAGCCGCCGCAAGGCCCGGTCCTGGCTCCCGCAGAGGGGCCGCCCCTGCAGGCCCTGGGCCAGCCCTCGGGCTCCTTCATCTGTGAAATGCCCAACTGCGGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321-'13-14,'13-12,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.776
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(47.5=93.3)
A:
PF0024926=Myb_DNA-binding=PD(49.2=76.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTAGCCACTTACAGCAA
R:
CGCAGTTGGGCATTTCACAGA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]