MmuEX6078197 @ mm9
Exon Skipping
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47474500-47485805:+
Coord C1 exon
chr17:47474500-47474588
Coord A exon
chr17:47478015-47478128
Coord C2 exon
chr17:47485599-47485805
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGGGTGCACTTTCTTGGCAGGTG
3' ss Score
9.09
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTTCTGACAAGTGGACATCCCTAGAAAGAAAACTGTTTAATAAAGCATTGGCCACTTACAGCAAAGACTTTATTTTTGTACAGAAGATG
Seq A exon
GTGAAGTCCAAGACAGTGGCTCAGTGCGTGGAGTACTACTACACTTGGAAGAAGATAATGCGACTAGGCCGGAAACACCGGACACGCCTGGCGGAAATCATTGACGACTGCATG
Seq C2 exon
ACCAGCGAAGAGGAAGAGGAGGCCGAGGAGGAAGAAGAGGACCCAGAAGAAGATAGGAAATCCATAAAAGAAGAGGAGAGTGAAGTGGCCAAGTCTCCAGAGCCACCGCCTGCCCCTGCCCTGGCTCCCACTGAGGGGCCACCCATGCAGGCTGTTGGCCAACAACCATCAGGCAACTTCATTTGTGAAATGCCCAACTGTGGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-'27-18,'27-17,28-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.841
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(48.3=93.3)
A:
PF0024926=Myb_DNA-binding=PD(48.3=73.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTGGCCACTTACAGCAA
R:
CCACAGTTGGGCATTTCACAA
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: