RnoEX6038750 @ rn6
Exon Skipping
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15664692-15676864:-
Coord C1 exon
chr9:15676776-15676864
Coord A exon
chr9:15673094-15673207
Coord C2 exon
chr9:15664692-15664895
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGGGTGCCCTTTCTCGGCAGGTG
3' ss Score
10.95
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTTCTGACAAGTGGACGTCCCTAGAAAGAAAACTGTTTAATAAAGCATTGGCCACTTACAGCAAAGACTTTATTTTTGTACAGAAGATG
Seq A exon
GTGAAGTCCAAGACAGTGGCTCAGTGCGTGGAGTACTACTACACTTGGAAGAAGATAATGCGGCTAGGGCGGAAACACCGGACACGCCTGGCAGAAATCATTGACGACTGCATG
Seq C2 exon
ACCAGCGAAGAGGAAGAGGACGCCGAAGAGGAGGAAGAGGACCCGGAAGAAGATAGGAAATCCATAAAAGATGAGGAGAGTGAAGTACCCAAGACACCAGAGCCACCGCCTGCCCCTGCCCTGGCTCCCACCGAGGGGGCACCCATGCAGGCTGGTGGCCAACCATCAGGCTCCTTCATTTGTGAGATGCCCAACTGTGGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.853
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(48.3=93.3)
A:
PF0024926=Myb_DNA-binding=PD(48.3=73.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTGGCCACTTACAGCAA
R:
CCACAGTTGGGCATCTCACAA
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]