GgaEX6029357 @ galGal3
Exon Skipping
Gene
ENSGALG00000009896 | TRERF1
Description
NA
Coordinates
chr3:24020612-24022575:-
Coord C1 exon
chr3:24022487-24022575
Coord A exon
chr3:24021558-24021671
Coord C2 exon
chr3:24020612-24020800
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGCAATTACTTACCTACAGGTT
3' ss Score
7.44
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GCTCCGACAAATGGACACATCAAGAAAGGAGGCTGTTCAAAGAGGCATTGTCCACCTACAGCAAAGATTTTATATTTGTACAGAAAATG
Seq A exon
GTTAAGTCTAAGACAGTTGCACAGTGCGTGGAATACTACTATACCTGGAAGAAAATCCTGCGCTGGGGACGGAAACACAGAACGCGTTTAGAGAAGAAAAGAGAGGAATGCATG
Seq C2 exon
ACAAGTGGAGAAGAGGAAGTGTTAGAGGAAGATGAGGAGATTGAAGAAGACAGAAAGGAAGAAAGGGAAATGCAGAAGTCTCCTGACCCACCAGCTATCCCTCTTGTTGGACCTATAGACCTGCCTACCCTTCAGAGTCTTTCACTTTCTTCATCCTCTTTCATCTGTGAAATGCCAAACTGTGGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009896-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.603
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=42.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCTGTTCAAAGAGGCAT
R:
CCACAGTTTGGCATTTCACAGA
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]