DreEX0009050 @ danRer10
Exon Skipping
Gene
ENSDARG00000088631 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr17:6096549-6100604:+
Coord C1 exon
chr17:6096549-6096637
Coord A exon
chr17:6098860-6098973
Coord C2 exon
chr17:6100509-6100604
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTGTACTTATTTAGGTC
3' ss Score
9.86
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GATCGGACAGATGGACGCTTCAGGAGAAACGGCAGCTAAACAAAGCACTTCTGCTTCATCACAAAGACTTCTATCTTGTGCAGAAAATG
Seq A exon
GTCAAGACAAAGTCTGTGGCTCAGTGTGTGGAGTACTATTACACGTGGAAAAAACGTTTGCGTTTGTGCTCGAGAGTCAGTACGGCTCTGGCTACACCAGTTCAAGATGTGCGG
Seq C2 exon
GGAGACTGGGCAACAAACAACCACAGCGAACCGAAGAAAGAATCCATCAGCAAAAGCAGGGACTCAGAAAACTCCAGCGCTGCGTTTGTCTGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088631-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.656
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=42.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGGACGCTTCAGGAGA
R:
TTCACAGACAAACGCAGCGC
Band lengths:
179-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]