BtaEX0012731 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85520346-85524274:-
Coord C1 exon
chr10:85524186-85524274
Coord A exon
chr10:85521766-85521915
Coord C2 exon
chr10:85520346-85520558
Length
150 bp
Sequences
Splice sites
3' ss Seq
CAGTTTTGGCTTCAAACCAGATC
3' ss Score
3.74
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCTCCGACCAGTGGAAGATGGCTGAGAGGAAGCTATTCAACAAGGGCATTGCCATCTACAAGAAGGACTTCTTTCTGGTGCAGAAACTG
Seq A exon
ATCCAGACCAAGACCGTGGCCCAGTGCGTGGAGTTCTACTACACCTACAAGAAGCAGGTGAAGATCGGCCGCAATGGGACGCTAACCTTTGGGGATGTGGATACGAGTGATGAAAAGTCGGCCCAGGAAGAGGTTGAAGTGGATATTAAG
Seq C2 exon
ACTTCCCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAATGAAGAGAGGCTAGAGCCCAAGAAGGAAGAAAAAGAGACCAGAAAGGAGGGGGAGGAGGAGATGCCAGAGACCCAGGACAAGGGGGAGCAGGAAGAGGGGCGAGAGCGAAGCCGGCGGGCAGCGGCTGTCAAAGCCACACAGACACTACAGGCCAATGAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272-'17-10,'17-9,19-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.480 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGGAAGATGGCTGAGA
R:
CTTCGCTCTCGCCCCTCTTC
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development