RnoEX0101511 @ rn6
Exon Skipping
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77988544-77991225:+
Coord C1 exon
chr1:77988544-77988632
Coord A exon
chr1:77990766-77990906
Coord C2 exon
chr1:77991044-77991225
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGTATCTTCCTTCCCACTAGATC
3' ss Score
10.07
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTTACCTGATACATAAGACG
Seq A exon
ATCCAGACTAAAAGTGTAGCACAGTGTGTTGAGTACTACTACATCTGGAAAAAAATGGTTAAGTTTGACTGTGGCCGAGCTCCTGGGCTGGAGAAGAGGGGCAGAAGAGAGCTGGATGAGGTAGAAAGGACTGAAGACAAG
Seq C2 exon
GTGACTTGCAGCCCTCGAGAAAGACCCACCCACCGTCCAACTCCTGAATTAAAGATAAAGACCAAGAGTTACAGGAGGGAGTCTATCCTTCACTCCAGCCCAAGTGCAGCCCCCAAGCGCACTCCTGAGCCTCCAGGGAGTGTGGAGAGCCAGGGCGTGTTCCCTTGCAGAGAGTGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800-'15-18,'15-17,17-18
Average complexity
ME(16_16-17_17[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.298 C2=0.787
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGACCCCCATGGAGAAG
R:
CACTCTCTGCAAGGGAACACG
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]