MmuEX6008497 @ mm10
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16092839-16095601:+
Coord C1 exon
chr7:16092839-16092927
Coord A exon
chr7:16095142-16095282
Coord C2 exon
chr7:16095420-16095601
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGTATCTTCCTTCCCACTAGATC
3' ss Score
10.07
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GTTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTTACCTGATACACAAGATG
Seq A exon
ATCCAGACTAAAAGTGTAGCACAGTGTGTCGAGTACTACTACATCTGGAAAAAGATGGTTAAGTTTGATTGTGGCCGAGCTCCTGGGCTGGAGAAGAGGGGCAGAAGAGAGCTGGATGAAGTAGAAAGGACTGAAGACAAG
Seq C2 exon
GTGACTTGCAGCCCTCGAGAGAGACCTACCCACCGTCCAACTCCTGAGTTAAAGATAAAGACCAAGAGTTACAGGAGAGAGTCTATCCTTCACTCCAGCCCAAGTGCAGCCCCCAAGCGCACTCCTGAGCCTCCAGGGAGTGTGGAGAGCCAGGGCGTGTTCCCTTGCAGAGAGTGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'14-27,'14-25,24-27=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.298 C2=0.738
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGACCCCCATGGAGAAG
R:
CACTCTCTGCAAGGGAACACG
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types