HsaEX1015828 @ hg38
Exon Skipping
Gene
ENSG00000183629 | GOLGA8G
Description
golgin A8 family member G [Source:HGNC Symbol;Acc:HGNC:25328]
Coordinates
chr15:28523268-28524547:-
Coord C1 exon
chr15:28524472-28524547
Coord A exon
chr15:28523943-28524034
Coord C2 exon
chr15:28523268-28523368
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCCACCACCCCCACCCCCAGGAG
3' ss Score
6.47
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAGCGTCTGGAAGCTGCGAGCCAGCAGAAACAGCAGCTAACGGCCCAGTTGAGCCTCATGGCTCTCCCTGGGGAAG
Seq A exon
GAGATGGAGGAGGACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCATTCCTAGCATCCCACAGGACCTGGAGAGCAGGGAGGCCATG
Seq C2 exon
AGCGGCTTTATGGACCACCTGGAGGAGAAGGCAGACCTGAGTGAGCTGGTGGAGAAAGAAGAACTTGGATTCTTCCAGTACTACAGAGAGAGATGCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183629_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=1.000 C2=0.471
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.4=100)
A:
PF150701=GOLGA2L5=FE(22.1=100)
C2:
PF150701=GOLGA2L5=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGCTGCGAGCCAG
R:
TGGCATCTCTCTCTGTAGTACTGG
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains