HsaEX1036484 @ hg38
Exon Skipping
Gene
ENSG00000167680 | SEMA6B
Description
semaphorin 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr19:4558026-4559808:-
Coord C1 exon
chr19:4559530-4559808
Coord A exon
chr19:4558337-4558489
Coord C2 exon
chr19:4558026-4558149
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCGCCGCCCCTTGCCCGCAGGCG
3' ss Score
11.06
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AAATCCTGGAAGCTCAGGGTCGTGAAGAGGAAGTCCAGCCGCGCTATGCGAGGTCTTCCTGTTTTTGGAGGGGGCAGGCACCCCAGGGCCGATTGTCGCGAATCACCTTCACCTCTGGGGGCTCAGAATCCCTGAGCCAGAAGGCCAGGGCAGGGCTGGGGGATACCCCTGCTGCTCAGACAGGAAAATGGGCTCGGAGCTTGCCCAATACTTCCCAGAAGGACGAGGCTGCTGAACTTCTCATTCGGGGCTCCGGGACCTGGACTGTACCCCTTTCTG
Seq A exon
GCGTCACCTCCTCCTGTCGCCTGGCCCTCGCCATGCAGACCCCGCGAGCGTCCCCTCCCCGCCCGGCCCTGCTGCTTCTGCTGCTGCTACTGGGGGGCGCCCACGGCCTCTTTCCTGAGGAGCCGCCGCCGCTTAGCGTGGCCCCCAGGGACT
Seq C2 exon
ACCTGAACCACTATCCCGTGTTTGTGGGCAGCGGGCCCGGACGCCTGACCCCCGCAGAAGGTGCTGACGACCTCAACATCCAGCGAGTCCTGCGGGTCAACAGGACGCTGTTCATTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167680_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.171 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(4.0=40.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAATCACCTTCACCTCTGG
R:
TTGAGGTCGTCAGCACCTTCT
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains