MmuEX6078488 @ mm10
Exon Skipping
Gene
ENSMUSG00000001227 | Sema6b
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:MGI Symbol;Acc:MGI:1202889]
Coordinates
chr17:56132498-56140343:-
Coord C1 exon
chr17:56140214-56140343
Coord A exon
chr17:56132716-56132868
Coord C2 exon
chr17:56132498-56132621
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACCGCCCTCCTGGCTTGTAGGTG
3' ss Score
9.3
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AGAGATGCGGCCCCGGCCGGGACACCGCGCTGCGCCCCCGCGGGAGCCGCCCGCGCGTGGGAGCCCGGGCTGAGACGCTGCGGGGCCGGGGCCGGGGCCGAGCCGAGCAGGTGCTCGGCCTGCGCTGGAG
Seq A exon
GTGTCATCTGTGGTCATCCGGTCCTCACCATGTGGACCCCGCGAGTGCCCCCTCCACGCCCGGCCCTGTCGTTTTTCCTGCTGTTGCTCCTGGGGGTCACCTATGGCCTTTTCCCAGAAGAACCACCTCCACTCAGCGTGGCTCCCAGGGACT
Seq C2 exon
ACTTGAGCCACTATCCCGTGTTCGTGGGCAGCGGGCCTGGTCGTCTGACCGCTGCGGAGGGTGCTGAGGACCTCAACATCCAGAGAGTGCTACGTGTTAACAGGACACTGTTCATTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001227-'3-3,'3-2,9-3=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(4.0=40.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types