DreEX0065145 @ danRer10
Exon Skipping
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:19017801-19167294:-
Coord C1 exon
chr8:19166567-19167294
Coord A exon
chr8:19021355-19021478
Coord C2 exon
chr8:19017801-19017915
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGCATGTTTTTCTAGTGC
3' ss Score
8.63
5' ss Seq
ACGGTATTG
5' ss Score
4.64
Exon sequences
Seq C1 exon
TGTAGCGGTCGGGGATTGATAAAGCAACTGCTTCCAGCTCAGACAGACACGTTTTCATAAGGCACAGCTGGTTGCGCTGGCGGGTTACACATAAGGCTGTTTATCTCCGCTTATTCCAAACGACTTCTTGGATTCTGGATGGCTGTCGGGAGGGGGATACAGCAGCGGCTGCAGGACCCAGTCGGGAATGCCATTTGTTCGCGGGCAGCATAAACGAGCTTTGTCGCGAGGTGTTTTTTACTGTTGGACAGGTGTCGTTGGGTTTGCTGGAGCGGCGGGGTTAGTTGTTAGTTGTTGGGGGGTTTGGACACAGTTGTCTTAAGGATGTCAGATCAGGGATCGGATCTGCTCAGAGACAGGTGCGATAGAGAGGAGTAGATTTCACGCGGACCCCTCCTCTCTTCCCTTCTTCTCTCCTCTCAGTCATTCTGGATTATAGTCCCGAAGAGGAGACTCATTCACTGAGATCCAGGGCTCACCGTTTCCCGCGGCTCTTATCG
Seq A exon
TGCCGGGGCTCTGCTACTATGATGACCGTGGCCAAACCTTTCATCAGGCTCTTCTGGCTTCTGCGGCTGGTGTGTGCGGTTTTCCCTGAAGAACCGGGACCTCTGAACTTCGTCCGCACTGACG
Seq C2 exon
TGGTAAGAAAGTATCCTGTGTTTCTTGGACGACCCCATCACTCAACCCTCAGACATGAACCCTTACACATACAGAGGATCCTGCAGGTCAACCGTACCCTTTACATCGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(3.8=41.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATCTGCTCAGAGACAGG
R:
TTGACCTGCAGGATCCTCTGT
Band lengths:
252-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]