MmuEX6078488 @ mm9
Exon Skipping
Gene
ENSMUSG00000001227 | Sema6b
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:MGI Symbol;Acc:MGI:1202889]
Coordinates
chr17:56271921-56273275:-
Coord C1 exon
chr17:56273035-56273275
Coord A exon
chr17:56272139-56272291
Coord C2 exon
chr17:56271921-56272044
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACCGCCCTCCTGGCTTGTAGGTG
3' ss Score
9.3
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGTCTTCCTGTTTTTTGGCCCTGACCGTTAGAACAGGGGCTGATGTTAGCCTGGGGCTGATATTCCCTCCATCATCCCCACCCACTGTGGCTTCTGATCTCCAAGACACAAGGTCAGGGGTAGGCTGGGAGACATCTCTGCTGCCTGGATGGGGAAACTGAGGCCCAGAGTTTGTTGGAGATTGACGAAGCTTCTGAGAAACCCACGTGGGGTGTCTCGAATTGGACTGTACTCCTTTCTG
Seq A exon
GTGTCATCTGTGGTCATCCGGTCCTCACCATGTGGACCCCGCGAGTGCCCCCTCCACGCCCGGCCCTGTCGTTTTTCCTGCTGTTGCTCCTGGGGGTCACCTATGGCCTTTTCCCAGAAGAACCACCTCCACTCAGCGTGGCTCCCAGGGACT
Seq C2 exon
ACTTGAGCCACTATCCCGTGTTCGTGGGCAGCGGGCCTGGTCGTCTGACCGCTGCGGAGGGTGCTGAGGACCTCAACATCCAGAGAGTGCTACGTGTTAACAGGACACTGTTCATTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001227-'2-2,'2-1,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(4.0=40.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCCCTGACCGTTAGAAC
R:
ACACGGGATAGTGGCTCAAGT
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: