BtaEX6038934 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031658 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr7:20787833-20789100:+
Coord C1 exon
chr7:20787833-20788036
Coord A exon
chr7:20788720-20788869
Coord C2 exon
chr7:20788977-20789100
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCCCCGCCCCTCGCTCACAGGTG
3' ss Score
11
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGCTCATGTCCACCTCCACGGATTCGGAATCCCCATGCCCCCAGGGCCTGGGCAGGGCTGGGAGATGTATCTGCTGCTCAGGCAGGGAAACTGAGGCTCAGAGCTAGCCCGGGACTTCACAGGAGGACGAGGCTTCGGATGTTTTCCTGGGGCCTCCGGACGGCGCCTCTTCTGAAAGGGGCCTGGAGGGCTGGGTTCCAGAGG
Seq A exon
GTGTTACCTCCTGTCGCCCTGACCTCGCCATGCGGACCCCGCGAGGGCCCCCTTCCCGTCCGGCCCTACTGCTCCTGCTGCTGCTCCTGGGAGGCGCCCACGGCCTCTTCCCCGAGGAGCCGCCGCCGCTCAGCGTGGCCCCGAGGGACT
Seq C2 exon
ACCTGAATCACTATCCCGTGTTCGTGGGCAGTGGGCCAGGACGCCTGACCCCCTCAGAAGACGCTGATGACCTCAACATCCAGCGAGTTCTACGGGTCAATAGAACGCTGTTCATCGGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031658-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.220 C2=0.179
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(4.0=40.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAGATGTATCTGCTGC
R:
GACCCGTAGAACTCGCTGGAT
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]