HsaEX6015441 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128370051-128379676:+
Coord C1 exon
chr2:128370051-128370178
Coord A exon
chr2:128377915-128378041
Coord C2 exon
chr2:128379557-128379676
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAATGGTCTGTGTCTTTCAGGGA
3' ss Score
9.05
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGCCAGCCAGCTGAACATTGGAGAGGAGGCATTGGAGCCTGATGGCCTTGGTGCAGACCGGCCCATGTCCAACCTGGAGAAGGTGCACTTCATCGTGGGCTACGCCATCCTGCGGCCCAGCCTCAG
Seq A exon
GGATGAGATTTACTGCCAGATCTGCAAGCAGCTCTCGGAGAACTTCAAAACAAGCAGCCTGGCCCGGGGCTGGATCCTGCTCAGCCTCTGCCTCGGCTGCTTCCCACCCTCAGAGAGGTTCATGAAG
Seq C2 exon
TATCTACTGAACTTCATCGGCCAAGGGCCGGCGACCTACGGCCCCTTCTGTGCCGAGCGCCTGAGACGCACCTATGCCAATGGGGTGCGTGCGGAGCCCCCCACCTGGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'24-31,'24-30,27-31=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGCTGAACATTGGAGA
R:
CTGCAGCTCCAGCCAGGT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)