BtaEX6008383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4839948-4843044:-
Coord C1 exon
chr2:4842917-4843044
Coord A exon
chr2:4841510-4841636
Coord C2 exon
chr2:4839948-4840067
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGCGCTCTGTGTCTTTCAGGGA
3' ss Score
9.41
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGCCAACCAGCTGAATATTGGAGAAGAGGCATTTGAAGAGGACAGCCCCCTCTCAGACCGACCCATGTCCAACCTGGAGAAGGTGCAGTTCATTGTGGGCTACGCCATCTTGCGTCCCGACCTCAG
Seq A exon
GGACGAAATTTACTGCCAGATCTGCAAGCAGCTCTCAGAGAACTACAAAACAAGCAGCCTGGCCCGGGGCTGGATCCTGCTCGGCCTGTGCCTGGGCTGCTTCCCGCCTTCCGAGAGGTTCCTGAAG
Seq C2 exon
TATCTGCTGAACTTCATTGGTCAAGGACCAGTCGGCTACGGGCCCTTCTGCGCTGAGCGCCTGAGACGCACCTGTGCCAATGGCGTGCGCACAGAGCCCCCCTCCTGGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACCAGCTGAATATTGGA
R:
CTGCAGCTCCAGCCAGGA
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]