MmuEX6000742 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31976259-31981113:-
Coord C1 exon
chr18:31980986-31981113
Coord A exon
chr18:31976970-31977096
Coord C2 exon
chr18:31976259-31976378
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTATGGGCTGTATCTTTCAGAGA
3' ss Score
7.89
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GTGGCCAGCCAGCTGAACTTTGGTGAAGAGGCATTCAAGTTTGATGGCCCTATCTCAGACAGACCCATGTCTAACCTAGAGAAGGTGCACTTCATTGTGGGCTACGCCATCATGCGTCCTGGACTCAG
Seq A exon
AGATGAAATCTACTGTCAGATCTGCAAGCAGCTCTCCGAGAACTACAAAACAAGTAGCCGGGCCCGGGGCTGGATCCTGCTCAGCCTCTGTCTGGGATGCTTCCCACCCTCAGAGAGGTTCATGAAG
Seq C2 exon
TATCTGCTGAATTTCATTAGTCAAGGGCCACCCAGCTATGGGCCCTTCTGTGCTGAACGGCTGCAACGCACCTTCGCCAATGGGGTGCGCGCAGAACCCCCCACCTGGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'34-38,'34-37,35-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGCTGAACTTTGGTGA
R:
CTGCAGCTCCAGCCAGGT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types