GgaEX6045473 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2292737-2295635:+
Coord C1 exon
chr9:2292737-2292864
Coord A exon
chr9:2294364-2294490
Coord C2 exon
chr9:2295516-2295635
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTCACATGTTGTATTACAGAGA
3' ss Score
7.49
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTGACAGACCAGCTGAAAAGTGGAGAAGAGGGTTTCCAGGAGGACAGCTCAATCTCTGAGAGACCCATGTCCAACCTAGAAAAAGTGCACTTCATCATTGGCAATGCAATTCTGCGCCCTGCCATCAG
Seq A exon
AGATGAGATTTATTGCCAGATTTGCAAACAACTCACTGAAAACAGCAGCAGGAGCAGCTATGCTCGAGGCTGGATACTTCTGTCACTTTGCCTTGGTTGTTTTCCCCCTTCAGACACATTTGTAAAG
Seq C2 exon
TACCTGCTGAATTTCATCCACAATGGACCCTCAGGCTATGCACCATATTGTGCTGAACGTCTGAGACGTACCTATGTCAATGGAGCAAGGACTGAACCTCCAAGCTGGCTGGAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGCTGAAAAGTGGAGA
R:
CTGAAGTTCCAGCCAGCTTGG
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]