RnoEX6058343 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24762849-24765949:-
Coord C1 exon
chr18:24765822-24765949
Coord A exon
chr18:24763536-24763662
Coord C2 exon
chr18:24762849-24762968
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTCTATGTCTTTCAGAGA
3' ss Score
8.55
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GTGGCCAGCCAGCAGAACATTGGTGAAGAGGTGTTCAAGTTTGATGGCCCTATCTCAGACAGACCCATGAGTAACTTGGAGAAGGTGCACTTCATTGTGGGCTACGCCATCATGCGTCCTGGACTCAG
Seq A exon
AGATGAAATCTACTGCCAGATCTGCAAGCAGCTCTCCGAGAACTACAAAACAAGTAGCCGGGCTCGGGGCTGGATCCTGCTCAGCCTCTGTCTGGGCTGCTTCCCACCCTCAGAGAGGTTCATGAAG
Seq C2 exon
TATCTGCTGAACTTCATTAGTCAAGGGCCAGCCAGCTATGGGCCCTTCTGTGCCGAACGCCTGCAACGCACCTTTGCCAATGGGGTGCGTGCAGAACCTCCCACCTGGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'34-46,'34-45,35-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGCAGAACATTGGTGA
R:
CTGCAGCTCCAGCCAGGT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]