DreEX6022052 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28091757-28092352:+
Coord C1 exon
chr6:28091757-28091914
Coord A exon
chr6:28092005-28092131
Coord C2 exon
chr6:28092233-28092352
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTAGTTTCTGTTATTGCTAGAGA
3' ss Score
3.99
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GCAGAGGACGGGTCTGAAGTTCCCAGACAATCCACTGTGCAAACTATAAGTGAAGAAGATGAGATGAACACAGATGGACTCACTCTGGACCGACCAATGACATCTCTTGAAAAGTTGCATATCATTGTGGGATATGCCATTGTCAGACGTGACCTCAG
Seq A exon
AGATGAAATCTACTGCCAGATCTGTAAGCAGCTCCAGGAGAACTCAAACCGCGGAAGCTTTTTTCGTGGCTGGATCCTCCTGTCTATCTGTTTGGGCATCTTTCCTCCTACTGAGCGCTTTATTAAG
Seq C2 exon
TATCTGCAGAGTTTTCTTCGTTTTGGTCCTGTGGGATACGCACCTTACTGTGCTGAGCGTCTTAGGCGCACTGTTGCCAATGGAGTGCGTGGAGAGCCGCCCAGCTGGCTTGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'25-28,'25-26,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=37.7)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGACGGGTCTGAAGTTCC
R:
CTCTCCACGCACTCCATTGG
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]