HsaEX6015441 @ hg38
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:127612476-127622101:+
Coord C1 exon
chr2:127612476-127612603
Coord A exon
chr2:127620340-127620466
Coord C2 exon
chr2:127621982-127622101
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAATGGTCTGTGTCTTTCAGGGA
3' ss Score
9.05
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGCCAGCCAGCTGAACATTGGAGAGGAGGCATTGGAGCCTGATGGCCTTGGTGCAGACCGGCCCATGTCCAACCTGGAGAAGGTGCACTTCATCGTGGGCTACGCCATCCTGCGGCCCAGCCTCAG
Seq A exon
GGATGAGATTTACTGCCAGATCTGCAAGCAGCTCTCGGAGAACTTCAAAACAAGCAGCCTGGCCCGGGGCTGGATCCTGCTCAGCCTCTGCCTCGGCTGCTTCCCACCCTCAGAGAGGTTCATGAAG
Seq C2 exon
TATCTACTGAACTTCATCGGCCAAGGGCCGGCGACCTACGGCCCCTTCTGTGCCGAGCGCCTGAGACGCACCTATGCCAATGGGGTGCGTGCGGAGCCCCCCACCTGGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'35-41,'35-40,38-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(18.9=46.5)
A:
PF0078412=MyTH4=FE(39.6=100)
C2:
PF0078412=MyTH4=FE(36.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGCTGAACATTGGAGA
R:
CTGCAGCTCCAGCCAGGT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains