HsaEX6016135 @ hg19
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160080743-160084476:+
Coord C1 exon
chr2:160080743-160080875
Coord A exon
chr2:160082199-160082290
Coord C2 exon
chr2:160084330-160084476
Length
92 bp
Sequences
Splice sites
3' ss Seq
AATGCGTGTTTGTTTTGCAGGAA
3' ss Score
10.94
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGCTGTACCTGGTGGAGAAGGGAGCCGTGATCGAGCATGTGGACCACAGCGGGATGCGGCCCTTGGACAGAGCCATCGGCTGCCGGAACACATCTGTAGTGGTGGCGCTACTCAGAAAGGGAGCCAAGTTAG
Seq A exon
GAAATGCTGCTTGGGCGATGGCCACTTCCAAACCTGATATCTTGATTATACTTTTACAGAAATTAATGGAGGAAGGAAATGTGATGTACAAA
Seq C2 exon
AAAGGGAAAATGAAAGAGGCAGCCCAGAGGTACCAGTATGCCTTAAGAAAGTTTCCTCGAGAAGGATTCGGAGAGGACATGAGACCCTTCAATGAATTAAGGGTTTCCCTCTATCTCAATTTGTCGCGATGCCGAAGAAAAACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-'32-35,'32-34,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
PF127962=Ank_2=PD(3.2=9.7),PF134141=TPR_11=PU(16.2=41.9)
C2:
PF134141=TPR_11=FE(60.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTAGTGGTGGCGCTACT
R:
CTTCGGCATCGCGACAAATTG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)