DreEX6020974 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11806777-11812555:-
Coord C1 exon
chr6:11812423-11812555
Coord A exon
chr6:11809286-11809377
Coord C2 exon
chr6:11806777-11806923
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCTTGAAGGTA
3' ss Score
12.22
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGCATTATCTGGTGGAATGTGGAGCCGCGATTGAACACATGGACTACAGCGGCATGAGACCTCTGGACCGGGCCATCGGCAGCAGAAACACCTCAGTAGTGGTCACTCTGCTGAAGAAAGGGGCTAAACTGG
Seq A exon
GTAACGCCGCTTGGGCCATGGCCACCTCCAAGCCAGACATCCTCATCATACTTCTGCAGAGGCTCATGGAGGAGGGAAACCTGCTTTATAAG
Seq C2 exon
AAAGGGAAGATGAAGGAAGCCGCTCAGAGGTATCAGTACGCGCTGCGGAAGTTTCCGAGGGAAGGTTTTGGGGAAGACCTGAAGGCATTCAGAGAGCTCCGGGTTTCCCTCTATCTCAACCTCTCCCGCTGCCGCCGCAAAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-'28-32,'28-31,30-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
PF134141=TPR_11=PU(15.2=38.7)
C2:
PF134141=TPR_11=FE(60.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACTACAGCGGCATGAG
R:
CTTCCCCAAAACCTTCCCTCG
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]