GgaEX6043377 @ galGal4
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36024194-36026852:+
Coord C1 exon
chr7:36024194-36024326
Coord A exon
chr7:36025119-36025210
Coord C2 exon
chr7:36026706-36026852
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTTACAATTTAACTTTCAGGAA
3' ss Score
10.01
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
GTGCAGTATTTGGTAGAAAAAGGAGCAATGATTGAGCATGTTGACCACAGCGGCATGCGGCCACTGGACAGAGCCATTGGATGTCGTAATACATCAGTGGTGGTTATGCTCCTGAGGAAAGGAGCTAAACTAG
Seq A exon
GAAATGCAGCATGGGCAATGGCCACCTCGAAACCAGATATTCTCCTCATTCTGCTGCAGAAACTCATGGAAGAAGGAAACATACTGTACAAA
Seq C2 exon
AAAGGCAAGATGAAAGAAGCAGCACAGCGCTATCAGTATGCCTTGAGGAAGTTTCCGAGGGAAGGATTTGGAGAAGAAATGAAAGCATTCAATGAGATGAGAGTTTCATTGTACTTGAATTTATCAAGGTGTCGCCGAAAAACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'32-41,'32-39,34-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
PF134141=TPR_11=PU(16.2=41.9)
C2:
PF134141=TPR_11=FE(60.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTTATGCTCCTGAGGA
R:
TGTTTTTCGGCGACACCTTGA
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]