HsaEX6016135 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159224232-159227965:+
Coord C1 exon
chr2:159224232-159224364
Coord A exon
chr2:159225688-159225779
Coord C2 exon
chr2:159227819-159227965
Length
92 bp
Sequences
Splice sites
3' ss Seq
AATGCGTGTTTGTTTTGCAGGAA
3' ss Score
10.94
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGCTGTACCTGGTGGAGAAGGGAGCCGTGATCGAGCATGTGGACCACAGCGGGATGCGGCCCTTGGACAGAGCCATCGGCTGCCGGAACACATCTGTAGTGGTGGCGCTACTCAGAAAGGGAGCCAAGTTAG
Seq A exon
GAAATGCTGCTTGGGCGATGGCCACTTCCAAACCTGATATCTTGATTATACTTTTACAGAAATTAATGGAGGAAGGAAATGTGATGTACAAA
Seq C2 exon
AAAGGGAAAATGAAAGAGGCAGCCCAGAGGTACCAGTATGCCTTAAGAAAGTTTCCTCGAGAAGGATTCGGAGAGGACATGAGACCCTTCAATGAATTAAGGGTTTCCCTCTATCTCAATTTGTCGCGATGCCGAAGAAAAACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-'80-72,'80-69,82-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
PF134141=TPR_11=PU(16.2=41.9)
C2:
PF134141=TPR_11=FE(60.0=100)
Main Skipping Isoform:
ENST00000263635fB27531
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTAGTGGTGGCGCTACT
R:
CTTCGGCATCGCGACAAATTG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains