RnoEX6016939 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45909018-45913079:+
Coord C1 exon
chr3:45909018-45909150
Coord A exon
chr3:45910843-45910934
Coord C2 exon
chr3:45912933-45913079
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACGGTGTGTTTGTTTTGCAGGAA
3' ss Score
11.53
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGCTGTACCTGGTGGAGAAAGGAGCCGTGATAGAACACGTGGACCACAGTGGGATGCGCCCCCTGGACAGAGCCATCGGTTGCCGAAACACCGCTGTAGTGGTTACACTGCTGAGAAAAGGAGCCAAACTAG
Seq A exon
GAAATGCCGCTTGGGCGATGGCCACTTCCAAACCTGATATTCTGATCATACTTTTACAGAAATTGATGGAGGAAGGAAATGTGATGTACAAG
Seq C2 exon
AAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGTATGCCTTACGGAAGTTCCCTCGGGAAGGACTCGGAGAAGACATGAGGCCATTCAATGAGCTGAGAGTCTCCCTCTATCTCAACCTGTCGAGATGCCGAAGGAAAACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'64-38,'64-37,65-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
PF134141=TPR_11=PU(16.2=41.9)
C2:
PF134141=TPR_11=FE(60.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGGTGGAGAAAGGAGCC
R:
AGGCATACTGGTACCTCTGGG
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]