BtaEX0035573 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37242779-37246599:-
Coord C1 exon
chr2:37246467-37246599
Coord A exon
chr2:37244601-37244692
Coord C2 exon
chr2:37242779-37242925
Length
92 bp
Sequences
Splice sites
3' ss Seq
AACACATGTTTATTTTGCAGGAA
3' ss Score
9.74
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGCTGTATCTGGTGGACAAGGGGGCTGTGATTGAGCACGTGGACCACAGCGGTATGCGGCCCTTGGACAGAGCCATTGGTTGTCGGAACACATCTGTAGTGGTTACGCTGCTGAGAAAAGGAGCCAAATTAG
Seq A exon
GAAATGCTGCCTGGGCGATGGCTACTTCCAAACCTGATATTTTGATTATACTTTTACAGAAATTGATGGAGGAAGGAAACGTGATGTACAAA
Seq C2 exon
AAAGGGAAGATGAAAGAAGCAGCCCAGAGGTACCAGTACGCCTTAAGGAAGTTTCCTCGAGAAGGATTCGGAGAGGACATGAGACCATTCAATGAGCTAAGAGTTTCCCTCTATCTCAATTTGTCTCGCTGCCGAAGAAAAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'42-46,'42-44,43-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
PF134141=TPR_11=PU(16.2=41.9)
C2:
PF134141=TPR_11=FE(60.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCTGGTGGACAAGGGGG
R:
AAGGCGTACTGGTACCTCTGG
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development