HsaEX6016145 @ hg19
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160027035-160031695:+
Coord C1 exon
chr2:160027035-160027316
Coord A exon
chr2:160028632-160028783
Coord C2 exon
chr2:160031464-160031695
Length
152 bp
Sequences
Splice sites
3' ss Seq
AAATGGGTCTTTCTCTGCAGCCT
3' ss Score
7.74
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CACGATTTGCTCCCTACAAGCCACAAGACATTTTGTTGAAACCCTTGTTGTTTGAAGTACCAAGCATAACAACAGACTCTGTGTTTGTGGGAAGGGATTGGCTCTTTCACCAGATAGAAGAAAACTTGAGGAACACAGAACTGGCAGAAAACAGAGGCGCGGTGGTGGTTGGCAATGTGGGATTTGGGAAGACGGCAATCATTTCCAAGTTGGTGGCCCTGAGCTGCCACGGAAGCCGCATGAGGCAGATTGCTTCCAACAGCCCGGGTTCATCACCTAAAA
Seq A exon
CCTCTGACCCCACTCAGGATCTTCATTTCACTCCGTTGCTTTCACCGAGTTCTTCCACAAGTGCTTCCAGCACAGCTAAAACACCTCTTGGGTCTATCAGTGCTGAAAACCAGAGACCAAGAGAGGATGCAGTGAAATATCTTGCTTCTAAG
Seq C2 exon
GTGGTGGCCTACCACTACTGCCAGGCTGACAACACGTACACTTGCCTGGTGCCCGAGTTTGTGCACAGCATCGCAGCTTTGCTCTGCCGGTCCCATCAGCTGGCCGCCTACAGAGACCTTCTGATAAAGGAGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTGCAGGACCCGGTGGCAGCTTTCAAGAGGGGAGTGCTGGAGCCACTCACAAACCTGAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.529 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=WD(100=66.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTTGGGAAGACGGCAAT
R:
CAGCATGCTCTGTAGTTGGGG
Band lengths:
257-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)