BtaEX6009653 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37289995-37294141:-
Coord C1 exon
chr2:37293860-37294141
Coord A exon
chr2:37292963-37293117
Coord C2 exon
chr2:37289995-37290226
Length
155 bp
Sequences
Splice sites
3' ss Seq
AACTGGTCTCTTCACTGCAGCTT
3' ss Score
7.34
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CACGATTTGCTCCCTACAAGCCACAAGACATTTTGTTGAAACCATTATTGTTTGAAGTACCAAGCATAACCACAGACTCTGTGTTTGTGGGAAGGGATTGGCTCTTTCACCAGATAGAAGAAAACTTGAGGAACACAGAACTGACAGAAAACAGAGGCGCGGTGGTTGTTGGAAACGTGGGCTTTGGGAAGACGGCTATCATTTCTAAGTTGGTGGCACTGAGCTGCCATGGAAGCCGCATGAGGCAGATCGCTTCCAACAGCCCCAGCTCATCAACGAAAA
Seq A exon
CTTCAGATTCCTCCCAGGATGTTCCTTTCACTCCACTGCTTTCACCAACTTCTTCTACAAGTGGTTCTGGTGCGGCTAAATCCCCCCCAGTGTCTGGATCTGATCCTGAGAACCAGAGACCACGAGAGGATTCCGTGAAATACCTGGCTTCTAAG
Seq C2 exon
GTCGTGGCCTACCACTACTGCCAGGCCGACAACACCTACACGTGCCTGGTGCCCGAGTTCGTGCACAGCATCGCGGCCCTGCTCTGCCGCTCCCACCAGCTGGCCGCCTACCGGGACCTGCTGATAAGGGAGCCCCAGCTCCAGAGCATGCTGAGCCTCAGGTCCTGTGTGCAGGACCCGGTGGCCGCCTTCAAGCGGGGCGTGCTGGAGCCACTCACAAGCCTGAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.808 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(80.7=70.5)
A:
PF131911=AAA_16=PD(18.1=28.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGTGGGAAGGGATTGGC
R:
CAGGCACGTGTAGGTGTTGTC
Band lengths:
249-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]