MmuEX6101448 @ mm10
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59791599-59796026:+
Coord C1 exon
chr2:59791599-59791880
Coord A exon
chr2:59793096-59793247
Coord C2 exon
chr2:59795795-59796026
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGGCTCTCTCTCCAGCCT
3' ss Score
8.39
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CACGGTTTGCTCCCTACAAACCTCAGGAGATCCTGTTGAAGCCCTTGCTGTTTGAAGTACCAAGCATCACAACTGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCACCAGATAGAGGAAAACTTGAGGAACACAGAGCTGGCAGAAAACAGAGGAGCCGTGGTCGTGGGGAGCGTAGGATTTGGGAAGACAGCCATCATTTCTAAGCTGGTGGCACTGAGCTGTCACGGAAGCCGCATGAGACAGATCGCATCCAGCAGTCCCAGTTTGTCACCCAAAT
Seq A exon
CCTCAGATCCCACTCAGGACCTTCCTGGTACTCCATTACTCTCACCAAGTTCTTCTACAAGTGCTCTCAGTGTGACCAGAACACCTGCTGGGCCTGGGACTGCTGACAGCCAGAGACCGAGAGAGGATGCGGTGAAATACCTCGCTTCTAAG
Seq C2 exon
GTGGTGGCCTACCATTACTGCCAGGCTGACAACACTTACACATGTCTGGTACCTGAGTTTGTGCACAGCATTGCTGCTTTGCTGTGCCGGTCCCACCAGCTGGCTGCCTACAGAGACCTTCTGATCAAGGAACCCCAGCTGCAGAGCATGCTGAGCCTCCGCTCCTGTGTGCAGGATCCCGTGGCTGCTTTCAAGAGGGGCGTCCTGGAGCCACTTACAAGCCTAAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-'65-51,'65-40,67-51=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=0.725 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(97.1=70.5)
A:
PF131911=AAA_16=PD(1.4=2.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACAGAGGAGCCGTGGTC
R:
AGAAGGTCTCTGTAGGCAGCC
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types