DreEX0077209 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11849955-11855267:-
Coord C1 exon
chr6:11854983-11855267
Coord A exon
chr6:11854228-11854352
Coord C2 exon
chr6:11849955-11850186
Length
125 bp
Sequences
Splice sites
3' ss Seq
GAATTGTGTTTGTGTTGTAGATC
3' ss Score
8.87
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
CTCGTCTCACACCCTACAAACCAGTGGACATCATGCTTAAACCCCTGCTGTTTGAGGTCCCCAGTGTCTCTATGGATGCTGTGTTTGTGGGCCGTGATTGGCTGTTTCAGCGGCTGGAGGAGGTGCTTGCGGGTGGAGGAGATGCCGATGAGGGTAAAGGCGCTGTGATCATCGGTAACGTCGGTTTTGGAAAGACAGCAGTGATTTCACGGCTGGTGGCTCTCAGTTGTCATGGTGGACGAATGAGACAGATCGCCTCCAGCAGTCCTGAAGCTACACCTCAGA
Seq A exon
ATCGAGGGTCAGATGCTGCTCAAAGCAGTCAGCTGAACCCTGCATCACAGAGTCCCATTCGCTGCCCCTCGACCCCAGAGACACACCGGCACAGAGAGGGCGCCGTCAAACGCCTGGCTGGCAAG
Seq C2 exon
GTGGTGGCGTATCACTACTGTCAGGCTGATAACACATACACATGCCTGGTCCCTGAGTTTGTGCACAGTGTGTCTGCATTACTGTGCAGAGCTCCTCTTCTCAATGCATATCGAGAGCTGTTACTCAGAGAAACACACTTGCAGAGTCTGCTCAGCTTACGCTCCTGCGTCCAGGACCCTGCAGCCGCTTTCCGAAAGGGAGTTCTGGAGCCTCTCACACTTCTGCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.817 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(70.8=70.8)
A:
PF131911=AAA_16=PD(28.1=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAGTCCTGAAGCTACA
R:
GAGAGGCTCCAGAACTCCCTT
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]