RnoEX6016947 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45864234-45868528:+
Coord C1 exon
chr3:45864234-45864515
Coord A exon
chr3:45865920-45866071
Coord C2 exon
chr3:45868297-45868528
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGGCTCTCTCTCCAGCCT
3' ss Score
8.39
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CACGGTTTGCTCCCTACAAACCACAGGAGATTTTGTTGAAGCCCTTGCTTTTCGAAGTGCCAAGCATCACGACCGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCAACAGATAGAAGAGAACTTGAGGAACACAGAACTGGCAGAAAACAGAGGAGCAGTGGTGGTGGGAAATGTAGGGTTTGGGAAGACAGCCATCATTTCCAAGTTGGTGGCACTGAGCTGTCATGGAAGCCGCATGAGACAGATAGCATCCAGCAGCCCCAGTTCATCTCTCAAAA
Seq A exon
CCTCAGATCCCACCCATGACCTTCCCGGTACTCCGTTACTTTCACCAAGTTCTTCCACAAGCGCTCTCGGTGCGGCCAGAACACCTCCCGGGCCCGGTACTGTTGACAGCCAGAGACCAAGAGAGGATGCGGTGAAATACCTCGCCTCTAAG
Seq C2 exon
GTGGTGGCCTACCATTACTGCCAGGCAGACAACACGTACACGTGTCTGGTACCTGAGTTTGTGCACAGCATTGCAGCTTTGCTGTGCCGGTCCCACCAGCTGGCTGCCTACCGAGACCTTCTGATCAGGGAGCCCCAGCTACAGAGCATGCTGAACCTCCGCTCCTGTGTGCAGGATCCTGTGGCTGCTTTCAAGAGGGGCATCCTGGAGCCACTTACAAACCTAAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'44-21,'44-20,46-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.745 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(97.1=70.5)
A:
PF131911=AAA_16=PD(1.4=2.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGGGAAATGTAGGGT
R:
GGCTCCCTGATCAGAAGGTCT
Band lengths:
254-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]