GgaEX0018989 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38142381-38145169:+
Coord C1 exon
chr7:38142381-38142662
Coord A exon
chr7:38144054-38144205
Coord C2 exon
chr7:38144938-38145169
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTGGTTGTTTTTAAAAATAGGCA
3' ss Score
5.84
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CACGTTTTGTCACCTATAAGCCTCAAGACATTTTGCTAAAGCCATTACTGTTTGAAGTGCCAAGCATAACGACAGACTCAGTGTTTGTTGGAAGAGAATGGCTGTTTCAGGCAATTGAAGAAAAATTGAAGAATACAGATCTGGCAGAGAGCAAAGGAACAGTTATTACTGGGAATGTGGGATTTGGGAAGACTGCTATTATTTCCCGTCTGGTGGCACTTAGTTGCCATGGAAGTCGCATGAGGCAAATAGCTTCAAACAGTCCTAATTCATCCCCCCAGA
Seq A exon
GCAGCGATTCCTGTCAGGAGATTCCCTTAAGTCAGTTACCTCTGTCTACTGCTCCTCCAAGTGGTACCTATACAGTGAAGACCATGAATTGTCCTGGTACTCCTGACAACCAGAATCAAACAGGTGACTCTGTGAAACGCCTTGCCTCAAGG
Seq C2 exon
GTTGTTGCTTATCACTATTGTCAAGCTGACAACACATACACTTGTCTTGTCCCAGAATTTGTGCACAGCATTGCAGCTTTGCTTTGTCGTTCGAGTCAATTAACAGCATACAAAGATCTTCTAATAAAAGAGCCTCATTTACAAAGCATGCTTAGCCTGAGATCTTGTGTCCAAGATCCAGCAGCAGCTTTTAAAAGGGGAGTGTTGGAACCACTTTCAAACCTCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.490 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(82.7=70.5)
A:
PF131911=AAA_16=PD(16.0=25.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGCACTTAGTTGCCAT
R:
GCTGCTGGATCTTGGACACAA
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]